#The importance and usage of features in different machine learning models. #The importance of the feature was calculated via the Fisher-Markov Selector proposed by Cheng et al. (PMID: 21493968). #Abbreviations: HIV-1, human immunodeficiency virus type 1; VIPs, HIV-1 interacting human proteins; PreVIP-33, machine learning model generated from training dataset S1’ with the top 33 features for the VIP prediction task; PreVIP-193, machine learning model generated from training dataset S1’ with the top 193 features for the VIP prediction task; PreVIP-441, machine learning model generated from training dataset S1’ with the optimum 441 features for the VIP prediction task; PreDIR-164, machine learning model generated from training dataset S2’ with 164 proteome-based features for the directionality prediction task; PreDIR-129, machine learning model generated from training dataset S2’ with the optimum 129 features for the directionality prediction task. #Features for predicting VIPs. Feature Feature index Importance coefficient Used by PreVIP-33 Used by PreVIP-193 Used by PreVIP-441 [Nonparametric][General.tissue]BTO:0000876 373 0.14347 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000878 374 0.14347 Yes Yes Yes [Nonparametric][General.tissue]BTO:0001044 384 0.14347 Yes Yes Yes [Nonparametric][General.tissue]BTO:0001433 411 0.14347 Yes Yes Yes [Nonparametric][General.tissue]BTO:0001441 412 0.14347 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000776 369 0.14279 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000545 444 0.14233 Yes Yes Yes [Nonparametric][General.tissue]BTO:0005453 434 0.14230 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000903 447 0.13947 Yes Yes Yes [Nonparametric][General.tissue]BTO:0001703 454 0.13938 Yes Yes Yes [Nonparametric][General.tissue]BTO:0001702 453 0.13916 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000862 446 0.13890 Yes Yes Yes [Nonparametric][General.tissue]BTO:0001629 452 0.13890 Yes Yes Yes [Nonparametric][General.tissue]BTO:0004410 433 0.13878 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000914 448 0.13833 Yes Yes Yes [Nonparametric][General.tissue]BTO:0004716 456 0.13833 Yes Yes Yes [Nonparametric][General.tissue]BTO:0004717 457 0.13833 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000214 321 0.13615 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000216 322 0.13615 Yes Yes Yes [Nonparametric][General.tissue]BTO:0001490 420 0.13615 Yes Yes Yes [Nonparametric][General.tissue]BTO:0002008 424 0.13615 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000553 348 0.13533 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000379 442 0.13510 Yes Yes Yes [Nonparametric][General.GOBProot]GO:0008152 242 0.13495 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000615 354 0.13294 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000772 445 0.13263 Yes Yes Yes [Nonparametric][General.tissue]BTO:0001528 451 0.13263 Yes Yes Yes [Nonparametric][General.tissue]BTO:0002878 455 0.13263 Yes Yes Yes [Nonparametric][General.GOCCroot]GO:0044422 293 0.13187 Yes Yes Yes [Nonparametric][General.tissue]BTO:0002042 425 0.13087 Yes Yes Yes [Nonparametric][General.GOBProot]GO:0065007 261 0.13004 Yes Yes Yes [Nonparametric][General.GOCCroot]GO:0016020 284 0.12954 Yes Yes Yes [Nonparametric][General.tissue]BTO:0000497 462 0.12886 Yes Yes Yes [Nonparametric][General.tissue]BTO:0001001 383 0.12875 No Yes Yes [Nonparametric][General.tissue]BTO:0000293 332 0.12792 No Yes Yes [Nonparametric][General.tissue]BTO:0000775 368 0.12710 No Yes Yes [Nonparametric][General.tissue]BTO:0001096 388 0.12710 No Yes Yes [Nonparametric][General.tissue]BTO:0000782 370 0.12706 No Yes Yes [Nonparametric][General.tissue]BTO:0001260 450 0.12645 No Yes Yes [Nonparametric][General.GOBProot]GO:0050896 258 0.12630 No Yes Yes [Nonparametric][General.tissue]BTO:0000175 461 0.12568 No Yes Yes [Nonparametric][General.tissue]BTO:0001067 473 0.12568 No Yes Yes [Nonparametric][General.GOCCroot]GO:0032991 288 0.12565 No Yes Yes [Nonparametric][General.tissue]BTO:0000131 459 0.12541 No Yes Yes [Nonparametric][General.tissue]BTO:0000132 460 0.12541 No Yes Yes [Nonparametric][General.tissue]BTO:0000243 440 0.12512 No Yes Yes [Nonparametric][General.tissue]BTO:0001175 449 0.12506 No Yes Yes [Nonparametric][General.tissue]BTO:0002417 427 0.12504 No Yes Yes [Nonparametric][General.codon]TGA_(N/A) 91 0.12487 No Yes Yes [Nonparametric][General.tissue]BTO:0001374 404 0.12421 No Yes Yes [Nonparametric][General.tissue]BTO:0000289 441 0.12408 No Yes Yes [Nonparametric][General.tissue]BTO:0000997 482 0.12381 No Yes Yes [Nonparametric][General.tissue]BTO:0000751 363 0.12374 No Yes Yes [Nonparametric][General.tissue]BTO:0002807 511 0.12284 No Yes Yes [Nonparametric][General.tissue]BTO:0000574 351 0.12273 No Yes Yes [Nonparametric][General.tissue]BTO:0001539 488 0.12242 No Yes Yes [Nonparametric][General.tissue]BTO:0002860 428 0.12240 No Yes Yes [Nonparametric][General.tissue]BTO:0000235 493 0.12156 No Yes Yes [Nonparametric][General.tissue]BTO:0000416 519 0.12029 No Yes Yes [Nonparametric][General.tissue]BTO:0000419 520 0.12029 No Yes Yes [Nonparametric][General.tissue]BTO:0001845 521 0.12029 No Yes Yes [Nonparametric][General.tissue]BTO:0002922 522 0.12029 No Yes Yes [Nonparametric][General.tissue]BTO:0000650 464 0.11960 No Yes Yes [Nonparametric][General.tissue]BTO:0000991 471 0.11960 No Yes Yes [Nonparametric][General.tissue]BTO:0000601 352 0.11918 No Yes Yes [Nonparametric][General.tissue]BTO:0001042 497 0.11863 No Yes Yes [Nonparametric][General.tissue]BTO:0003399 512 0.11863 No Yes Yes [Nonparametric][General.tissue]BTO:0001422 409 0.11861 No Yes Yes [Nonparametric][General.tissue]BTO:0000439 443 0.11857 No Yes Yes [Nonparametric][General.tissue]BTO:0000202 439 0.11748 No Yes Yes [Nonparametric][General.tissue]BTO:0001279 396 0.11697 No Yes Yes [Nonparametric][General.tissue]BTO:0000089 311 0.11604 No Yes Yes [Nonparametric][General.tissue]BTO:0000879 375 0.11546 No Yes Yes [Nonparametric][General.tissue]BTO:0001442 413 0.11546 No Yes Yes [Nonparametric][General.tissue]BTO:0001234 393 0.11495 No Yes Yes [Nonparametric][General.tissue]BTO:0000580 463 0.11430 No Yes Yes [Nonparametric][General.tissue]BTO:0000737 465 0.11430 No Yes Yes [Nonparametric][General.tissue]BTO:0000739 466 0.11430 No Yes Yes [Nonparametric][General.tissue]BTO:0000741 467 0.11430 No Yes Yes [Nonparametric][General.tissue]BTO:0000773 468 0.11430 No Yes Yes [Nonparametric][General.tissue]BTO:0000873 469 0.11430 No Yes Yes [Nonparametric][General.tissue]BTO:0001035 472 0.11430 No Yes Yes [Nonparametric][General.tissue]BTO:0001271 475 0.11430 No Yes Yes [Nonparametric][General.tissue]BTO:0002144 477 0.11430 No Yes Yes [Nonparametric][General.tissue]BTO:0002504 478 0.11430 No Yes Yes [Nonparametric][General.GOMFroot]GO:0003824 265 0.11430 No Yes Yes [Nonparametric][General.tissue]BTO:0004726 479 0.11426 No Yes Yes [Nonparametric][General.tissue]BTO:0001421 408 0.11401 No Yes Yes [Nonparametric][General.tissue]BTO:0001487 417 0.11323 No Yes Yes [Nonparametric][General.tissue]BTO:0001365 501 0.11299 No Yes Yes [Nonparametric][General.tissue]BTO:0002731 510 0.11299 No Yes Yes [Nonparametric][General.GOBProot]GO:0071840 262 0.11287 No Yes Yes [Nonparametric][General.GOCCroot]GO:0043226 289 0.11278 No Yes Yes [Nonparametric][General.GOCCroot]GO:0044425 295 0.11262 No Yes Yes [Nonparametric][General.tissue]BTO:0002495 508 0.11262 No Yes Yes [Nonparametric][General.tissue]BTO:0003975 513 0.11262 No Yes Yes [Nonparametric][General.tissue]BTO:0003976 514 0.11262 No Yes Yes [Nonparametric][General.tissue]BTO:0000138 491 0.11252 No Yes Yes [Nonparametric][General.tissue]BTO:0002191 504 0.11252 No Yes Yes [Nonparametric][General.tissue]BTO:0004676 515 0.11252 No Yes Yes [Nonparametric][General.GOBProot]GO:0051179 259 0.11233 No Yes Yes [Nonparametric][General.tissue]BTO:0000149 438 0.11214 No Yes Yes [Nonparametric][General.tissue]BTO:0000484 343 0.11207 No Yes Yes [Nonparametric][General.tissue]BTO:0000045 436 0.11162 No Yes Yes [Nonparametric][General.tissue]BTO:0001311 498 0.11103 No Yes Yes [Nonparametric][General.tissue]BTO:0000980 381 0.11086 No Yes Yes [Nonparametric][General.tissue]BTO:0000662 358 0.10996 No Yes Yes [Nonparametric][General.tissue]BTO:0000211 492 0.10979 No Yes Yes [Nonparametric][General.tissue]BTO:0000418 494 0.10979 No Yes Yes [Nonparametric][General.tissue]BTO:0000113 490 0.10907 No Yes Yes [Nonparametric][General.tissue]BTO:0001028 496 0.10907 No Yes Yes [Nonparametric][General.tissue]BTO:0001325 499 0.10907 No Yes Yes [Nonparametric][General.tissue]BTO:0001333 500 0.10907 No Yes Yes [Nonparametric][General.tissue]BTO:0001832 502 0.10907 No Yes Yes [Nonparametric][General.tissue]BTO:0001834 503 0.10907 No Yes Yes [Nonparametric][General.tissue]BTO:0002507 509 0.10907 No Yes Yes [Nonparametric][General.tissue]BTO:0000041 489 0.10878 No Yes Yes [Nonparametric][General.tissue]BTO:0000758 495 0.10878 No Yes Yes [Nonparametric][General.tissue]BTO:0001049 385 0.10863 No Yes Yes [Nonparametric][General.tissue]BTO:0000408 336 0.10855 No Yes Yes [Nonparametric][General.tissue]BTO:0000961 470 0.10695 No Yes Yes [Nonparametric][General.tissue]BTO:0001362 476 0.10695 No Yes Yes [Nonparametric][General.tissue]BTO:0002252 507 0.10635 No Yes Yes [Nonparametric][General.tissue]BTO:0001101 486 0.10598 No Yes Yes [Nonparametric][General.tissue]BTO:0000886 376 0.10504 No Yes Yes [Nonparametric][General.tissue]BTO:0000106 458 0.10453 No Yes Yes [Nonparametric][General.tissue]BTO:0001231 474 0.10453 No Yes Yes [Nonparametric][General.codon]TAA_(N/A) 89 0.10171 No Yes Yes [Nonparametric][General.GOBProot]GO:0032502 252 0.10139 No Yes Yes [Nonparametric][General.tissue]BTO:0000614 353 0.10034 No Yes Yes [Nonparametric][General.tissue]BTO:0000342 333 0.09854 No Yes Yes [Nonparametric][General.GOBProot]GO:0009987 245 0.09832 No Yes Yes [Nonparametric][General.tissue]BTO:0001368 402 0.09761 No Yes Yes [Nonparametric][General.tissue]BTO:0002246 505 0.09657 No Yes Yes [Nonparametric][General.tissue]BTO:0002250 506 0.09657 No Yes Yes [Nonparametric][General.tissue]BTO:0001123 523 0.09532 No Yes Yes [Nonparametric][General.tissue]BTO:0001264 524 0.09532 No Yes Yes [Nonparametric][General.tissue]BTO:0000136 313 0.09315 No Yes Yes [Nonparametric][General.tissue]BTO:0001340 399 0.09315 No Yes Yes [Nonparametric][General.tissue]BTO:0000925 483 0.09289 No Yes Yes [Nonparametric][General.tissue]BTO:0000926 484 0.09141 No Yes Yes [Nonparametric][General.tissue]BTO:0001072 485 0.09141 No Yes Yes [Nonparametric][General.tissue]BTO:0001104 487 0.09141 No Yes Yes [Nonparametric][General.tissue]BTO:0001387 406 0.09110 No Yes Yes [Nonparametric][General.codon]TAG_(N/A) 90 0.08751 No Yes Yes [Nonparametric][General.GOCCroot]GO:0044421 292 0.08727 No Yes Yes [Nonparametric][General.tissue]BTO:0001355 400 0.08524 No Yes Yes [Nonparametric][General.tissue]BTO:0001158 391 0.08184 No Yes Yes [Nonparametric][General.tissue]BTO:0000141 314 0.07918 No Yes Yes [Nonparametric][General.tissue]BTO:0000232 325 0.07783 No Yes Yes [Nonparametric][General.GOBProot]GO:0032501 251 0.07726 No Yes Yes [Nonparametric][General.tissue]BTO:0000421 338 0.07702 No Yes Yes [Nonparametric][General.tissue]BTO:0000673 361 0.07661 No Yes Yes [Nonparametric][General.GOBProot]GO:0002376 238 0.07659 No Yes Yes [Nonparametric][General.tissue]BTO:0000672 360 0.07645 No Yes Yes [Nonparametric][General.tissue]BTO:0000146 316 0.07584 No Yes Yes [Nonparametric][General.tissue]BTO:0000784 371 0.07359 No Yes Yes [Nonparametric][General.GOMFroot]GO:0005488 268 0.07305 No Yes Yes [Nonparametric][General.tissue]BTO:0000199 319 0.07177 No Yes Yes [Nonparametric][General.tissue]BTO:0001103 389 0.07032 No Yes Yes [Nonparametric][General.tissue]BTO:0001281 397 0.06910 No Yes Yes [Nonparametric][General.tissue]BTO:0000765 367 0.06859 No Yes Yes [Nonparametric][General.tissue]BTO:0001203 392 0.06859 No Yes Yes [Nonparametric][General.tissue]BTO:0000445 340 0.06817 No Yes Yes [Parametric][General.evolution]Average_dS 94 0.06813 No Yes Yes [Nonparametric][General.tissue]BTO:0000928 378 0.06630 No Yes Yes [Nonparametric][General.tissue]BTO:0000959 379 0.06547 No Yes Yes [Nonparametric][General.tissue]BTO:0001253 395 0.06473 No Yes Yes [Nonparametric][General.tissue]BTO:0000365 335 0.06224 No Yes Yes [Nonparametric][VIP.MTF]MTF_occurrence 231 0.06178 No Yes Yes [Nonparametric][General.tissue]BTO:0001129 390 0.06078 No Yes Yes [Nonparametric][General.tissue]BTO:0001379 405 0.06078 No Yes Yes [Nonparametric][General.tissue]BTO:0000420 337 0.06037 No Yes Yes [Nonparametric][General.tissue]BTO:0000828 372 0.06037 No Yes Yes [Nonparametric][General.tissue]BTO:0000975 380 0.06031 No Yes Yes [Nonparametric][General.tissue]BTO:0001424 410 0.06023 No Yes Yes [Nonparametric][General.tissue]BTO:0000449 341 0.05947 No Yes Yes [Nonparametric][General.tissue]BTO:0001078 386 0.05947 No Yes Yes [Parametric][General.network]Degree 532 0.05947 No Yes Yes [Nonparametric][General.GOCCroot]GO:0044464 297 0.05924 No Yes Yes [Parametric][General.evolution]Average_dN 93 0.05843 No Yes Yes [Nonparametric][General.tissue]BTO:0000988 382 0.05811 No Yes Yes [Nonparametric][General.GOBProot]GO:0051704 260 0.05786 No Yes Yes [Nonparametric][General.GOCCroot]GO:0005576 281 0.05701 No Yes Yes [Nonparametric][General.tissue]BTO:0001418 407 0.05648 No Yes Yes [Nonparametric][General.tissue]BTO:0001090 387 0.05552 No Yes Yes [Parametric][General.network]Stress 536 0.05535 No Yes Yes [Nonparametric][General.tissue]BTO:0000634 355 0.05483 No Yes Yes [Nonparametric][General.tissue]BTO:0000759 365 0.05452 No Yes Yes [Parametric][General.network]BetweennessCentrality 529 0.05428 No Yes Yes [Nonparametric][General.tissue]BTO:0001307 398 0.05416 No Yes Yes [Parametric][General.splicing]CodingTranscriptNo. 2 0.05416 No Yes Yes [Nonparametric][General.tissue]BTO:0001493 422 0.05386 No Yes Yes [Nonparametric][General.tissue]BTO:0000084 309 0.05380 No No Yes [Nonparametric][General.tissue]BTO:0000166 317 0.05380 No No Yes [Nonparametric][General.tissue]BTO:0002273 426 0.05380 No No Yes [Nonparametric][General.tissue]BTO:0000047 303 0.05376 No No Yes [Nonparametric][General.tissue]BTO:0000140 437 0.05311 No No Yes [Nonparametric][General.tissue]BTO:0000493 344 0.05241 No No Yes [Nonparametric][General.tissue]BTO:0000651 357 0.05226 No No Yes [Nonparametric][General.tissue]BTO:0000174 318 0.05088 No No Yes [Nonparametric][General.tissue]BTO:0000284 331 0.05088 No No Yes [Nonparametric][General.tissue]BTO:0001486 416 0.05032 No No Yes [Nonparametric][General.tissue]BTO:0001369 403 0.04978 No No Yes [Parametric][General.splicing]ExonNo. 3 0.04965 No No Yes [Parametric][General.codon]TTA_(L) 30 0.04959 No No Yes [Nonparametric][General.tissue]BTO:0000887 377 0.04955 No No Yes [Nonparametric][General.tissue]BTO:0001485 415 0.04955 No No Yes [Parametric][General.splicing]TranscriptNo. 1 0.04897 No No Yes [Nonparametric][General.GOMFroot]GO:0098772 277 0.04759 No No Yes [Parametric][General.Disorder]IUPred_disorder_coverage% 235 0.04717 No No Yes [Parametric][General.codon]GAA_(E) 74 0.04707 No No Yes [Parametric][General.codon]ATA_(I) 38 0.04701 No No Yes [Parametric][General.codon]GAG_(E) 75 0.04676 No No Yes [Parametric][VIP.MTF]MTF_occurrence 230 0.04645 No No Yes [Parametric][General.codon]AGA_(R) 83 0.04612 No No Yes [Parametric][General.codon]CGT_(R) 79 0.04581 No No Yes [Parametric][General.DNA]TpA% 16 0.04580 No No Yes [Parametric][General.codon]GTT_(V) 40 0.04571 No No Yes [Parametric][General.codon]GTA_(V) 42 0.04558 No No Yes [Nonparametric][General.tissue]BTO:0000562 349 0.04549 No No Yes [Nonparametric][General.tissue]BTO:0000088 310 0.04547 No No Yes [Nonparametric][General.tissue]BTO:0000233 326 0.04521 No No Yes [Nonparametric][General.tissue]BTO:0000269 329 0.04487 No No Yes [Nonparametric][General.tissue]BTO:0000123 312 0.04478 No No Yes [Parametric][General.DNA]AT(CG) 9 0.04472 No No Yes [Nonparametric][General.tissue]BTO:0000231 324 0.04462 No No Yes [Nonparametric][General.tissue]BTO:0000239 327 0.04462 No No Yes [Parametric][General.codon]CTG_(L) 35 0.04460 No No Yes [Nonparametric][General.tissue]BTO:0000671 359 0.04440 No No Yes [Parametric][General.DNA]ApT% 13 0.04408 No No Yes [Parametric][General.DNA]C(ATG) 7 0.04380 No No Yes [Parametric][General.codon]CAT_(H) 64 0.04330 No No Yes [Parametric][General.Disorder]Espritz_disorder_coverage% 232 0.04315 No No Yes [Parametric][General.DNA]TpT% 17 0.04313 No No Yes [Nonparametric][General.tissue]BTO:0000753 364 0.04307 No No Yes [Nonparametric][General.tissue]BTO:0005810 435 0.04307 No No Yes [Parametric][General.DNA]ApA% 12 0.04264 No No Yes [Parametric][General.DNA]CpC% 22 0.04236 No No Yes [Parametric][General.network]ClusteringCoefficient 531 0.04208 No No Yes [Parametric][General.codon]TCG_(S) 47 0.04207 No No Yes [Nonparametric][General.tissue]BTO:0000431 339 0.04205 No No Yes [Parametric][General.evolution]ParalogueNO. 92 0.04190 No No Yes [Parametric][General.codon]CAG_(Q) 67 0.04188 No No Yes [Parametric][General.codon]CCG_(P) 53 0.04185 No No Yes [Parametric][General.codon]CTA_(L) 34 0.04183 No No Yes [Parametric][General.codon]CAA_(Q) 66 0.04179 No No Yes [Parametric][General.codon]CGA_(R) 81 0.04168 No No Yes [Parametric][General.Disorder]Espritz_50-length_disorder 234 0.04165 No No Yes [Nonparametric][General.tissue]BTO:0001613 423 0.04155 No No Yes [Parametric][General.codon]CGG_(R) 82 0.04145 No No Yes [Nonparametric][General.tissue]BTO:0000478 342 0.04137 No No Yes [Parametric][General.codon]TAT_(Y) 58 0.04132 No No Yes [Parametric][General.codon]ATT_(I) 36 0.04122 No No Yes [Parametric][General.codon]GAC_(D) 73 0.04118 No No Yes [Parametric][General.codon]CTT_(L) 32 0.04111 No No Yes [Parametric][General.codon]GAT_(D) 72 0.04110 No No Yes [Parametric][General.DNA]A(TCG) 5 0.04100 No No Yes [Parametric][General.evolution]dN/dS_with_Orangutan 104 0.04095 No No Yes [Parametric][General.splicing]UET 4 0.04088 No No Yes [Parametric][General.codon]GCC_(A) 61 0.04085 No No Yes [Nonparametric][General.tissue]BTO:0000570 350 0.04083 No No Yes [Parametric][General.codon]AAT_(N) 68 0.04082 No No Yes [Parametric][General.DNA]GpG% 27 0.04074 No No Yes [Parametric][General.codon]ACG_(T) 57 0.04071 No No Yes [Parametric][General.Disorder]Espritz_30-length_disorder 233 0.04068 No No Yes [Parametric][General.codon]GTG_(V) 43 0.04067 No No Yes [Parametric][General.evolution]dN/dS_with_Gorilla 101 0.04066 No No Yes [Parametric][General.tissue]Tissue_occurence 527 0.04056 No No Yes [Nonparametric][General.tissue]BTO:0000345 334 0.04053 No No Yes [Parametric][General.evolution]dN/dS_with_Gibbon 107 0.04049 No No Yes [Nonparametric][General.tissue]BTO:0000763 366 0.04047 No No Yes [Parametric][General.codon]ATC_(I) 37 0.04041 No No Yes [Parametric][General.evolution]dN/dS_with_Chimpanzee 98 0.04037 No No Yes [Nonparametric][General.tissue]BTO:0000203 320 0.04035 No No Yes [Parametric][General.codon]GCG_(A) 63 0.04021 No No Yes [Nonparametric][General.GOCCroot]GO:0031974 287 0.04017 No No Yes [Parametric][General.DNA]G(ATC) 8 0.04007 No No Yes [Parametric][General.codon]AAA_(K) 70 0.03990 No No Yes [Parametric][General.DNA]GpC% 26 0.03982 No No Yes [Parametric][General.codon]AAC_(N) 69 0.03962 No No Yes [Parametric][General.DNA]T(ACG) 6 0.03946 No No Yes [Parametric][General.codon]CAC_(H) 65 0.03943 No No Yes [Parametric][General.codon]CGC_(R) 80 0.03938 No No Yes [Parametric][General.AAC]AA_I 117 0.03934 No No Yes [Parametric][General.codon]TTT_(F) 28 0.03926 No No Yes [Parametric][General.codon]GGC_(G) 86 0.03917 No No Yes [Parametric][General.codon]AAG_(K) 71 0.03899 No No Yes [Parametric][General.codon]GGA_(G) 87 0.03898 No No Yes [Parametric][General.codon]TCA_(S) 46 0.03896 No No Yes [Parametric][General.codon]CCC_(P) 51 0.03880 No No Yes [Parametric][General.codon]CCT_(P) 50 0.03873 No No Yes [Parametric][General.codon]GCA_(A) 62 0.03861 No No Yes [Parametric][General.codon]TAC_(Y) 59 0.03850 No No Yes [Parametric][General.codon]AGT_(S) 48 0.03844 No No Yes [Parametric][General.codon]AGC_(S) 49 0.03822 No No Yes [Parametric][General.codon]GCT_(A) 60 0.03820 No No Yes [Parametric][General.codon]ACC_(T) 55 0.03819 No No Yes [Parametric][General.codon]CTC_(L) 33 0.03812 No No Yes [Parametric][General.codon]GGT_(G) 85 0.03797 No No Yes [Parametric][General.codon]TTC_(F) 29 0.03769 No No Yes [Parametric][General.codon]TCT_(S) 44 0.03765 No No Yes [Parametric][General.AAC]AA_N 110 0.03758 No No Yes [Parametric][General.codon]TCC_(S) 45 0.03750 No No Yes [Parametric][General.codon]ACT_(T) 54 0.03749 No No Yes [Parametric][General.AAC]AA_Y 126 0.03743 No No Yes [Nonparametric][General.tissue]BTO:0000020 480 0.03731 No No Yes [Nonparametric][General.tissue]BTO:0000091 481 0.03731 No No Yes [Parametric][General.codon]TTG_(L) 31 0.03714 No No Yes [Parametric][General.AAC]AA_L 118 0.03709 No No Yes [Parametric][General.DNA]CpG% 23 0.03706 No No Yes [Parametric][General.network]Radiality 535 0.03701 No No Yes [Parametric][General.AAC]AA_K 119 0.03695 No No Yes [Nonparametric][General.tissue]BTO:0001085 517 0.03690 No No Yes [Parametric][General.evolution]Average_dS_with_Orangutan 103 0.03688 No No Yes [Nonparametric][General.tissue]BTO:0000534 347 0.03687 No No Yes [Nonparametric][General.tissue]BTO:0001363 401 0.03687 No No Yes [Parametric][General.codon]ACA_(T) 56 0.03683 No No Yes [Parametric][General.AAC]AA_M 120 0.03682 No No Yes [Parametric][General.AAC]AA_D 111 0.03681 No No Yes [Parametric][General.AAC]Huge/Aromatic 141 0.03679 No No Yes [Parametric][General.network]Eccentricity 533 0.03670 No No Yes [Parametric][General.codon]TGC_(C) 77 0.03669 No No Yes [Parametric][General.network]ClosenessCentrality 530 0.03668 No No Yes [Nonparametric][General.tissue]BTO:0000706 362 0.03665 No No Yes [Parametric][General.codon]CCA_(P) 52 0.03654 No No Yes [Parametric][General.AAC]AA_G 115 0.03642 No No Yes [Parametric][General.DNA]AC(TG) 10 0.03638 No No Yes [Parametric][General.AAC]AA_S 123 0.03612 No No Yes [Parametric][General.AAC]Large 140 0.03610 No No Yes [Parametric][General.AAC]AA_V 127 0.03604 No No Yes [Parametric][General.codon]GGG_(G) 88 0.03599 No No Yes [Nonparametric][General.GOMFroot]GO:0140110 279 0.03588 No No Yes [Parametric][General.DNA]CpT% 21 0.03587 No No Yes [Nonparametric][General.tissue]BTO:0001244 394 0.03584 No No Yes [Nonparametric][General.tissue]BTO:0003092 430 0.03584 No No Yes [Parametric][General.AAC]Tiny 137 0.03581 No No Yes [Parametric][General.DNA]GpT% 25 0.03576 No No Yes [Parametric][General.AAC]AA_W 125 0.03576 No No Yes [Parametric][General.AAC]AA_F 121 0.03570 No No Yes [Parametric][General.AAC]Hydroxyl 131 0.03568 No No Yes [Parametric][General.AAC]Amide 133 0.03567 No No Yes [Parametric][General.DNA]ApC% 14 0.03566 No No Yes [Parametric][General.AAC]AA_R 109 0.03560 No No Yes [Nonparametric][General.tissue]BTO:0000142 315 0.03555 No No Yes [Parametric][General.evolution]Average_dN_with_Orangutan 102 0.03554 No No Yes [Parametric][General.evolution]Average_dN_with_Gibbon 105 0.03552 No No Yes [Parametric][General.AAC]AA_P 122 0.03550 No No Yes [Parametric][General.codon]TGT_(C) 76 0.03533 No No Yes [Parametric][General.AAC]Aliphatic 128 0.03527 No No Yes [Parametric][General.AAC]AA_H 116 0.03526 No No Yes [Parametric][General.evolution]Average_dS_with_Gorilla 100 0.03524 No No Yes [Parametric][General.DNA]GpA% 24 0.03522 No No Yes [Parametric][General.codon]GTC_(V) 41 0.03522 No No Yes [Parametric][General.AAC]AA_A 108 0.03518 No No Yes [Parametric][General.AAC]Small 138 0.03518 No No Yes [Parametric][General.DNA]TpG% 19 0.03513 No No Yes [Parametric][General.evolution]Average_dS_with_Chimpanzee 97 0.03509 No No Yes [Parametric][General.AAC]AA_T 124 0.03500 No No Yes [Parametric][General.AAC]Neutral 135 0.03493 No No Yes [Parametric][General.AAC]AA_Q 114 0.03493 No No Yes [Nonparametric][General.tissue]BTO:0000227 323 0.03487 No No Yes [Parametric][General.DNA]CpA% 20 0.03483 No No Yes [Parametric][General.AAC]Polar 143 0.03480 No No Yes [Parametric][General.AAC]Sulfur 130 0.03478 No No Yes [Parametric][General.AAC]Nonpolar 144 0.03476 No No Yes [Parametric][General.DNA]ApG% 15 0.03451 No No Yes [Nonparametric][General.tissue]BTO:0001484 414 0.03448 No No Yes [Parametric][General.DNA]TpC% 18 0.03438 No No Yes [Parametric][General.AAC]AA_C 112 0.03434 No No Yes [Parametric][General.network]TopologicalCoefficient 537 0.03427 No No Yes [Parametric][General.AAC]Uncharged 142 0.03419 No No Yes [Parametric][General.evolution]Average_dS_with_Gibbon 106 0.03418 No No Yes [Nonparametric][General.GOBProot]GO:0022414 248 0.03409 No No Yes [Nonparametric][General.tissue]BTO:0003099 432 0.03405 No No Yes [Parametric][General.evolution]Average_dN_with_Gorilla 99 0.03404 No No Yes [Parametric][General.DNA]AG(TC) 11 0.03400 No No Yes [Parametric][General.AAC]Acidic/Negative_charged 132 0.03394 No No Yes [Nonparametric][General.GOCCroot]GO:0030054 286 0.03393 No No Yes [Nonparametric][General.tissue]BTO:0000648 356 0.03391 No No Yes [Nonparametric][General.tissue]BTO:0000855 516 0.03385 No No Yes [Parametric][General.codon]AGG_(R) 84 0.03377 No No Yes [Parametric][General.AAC]AA_E 113 0.03356 No No Yes [Parametric][General.AAC]Basic/Positive_charged 129 0.03348 No No Yes [Parametric][General.AAC]Medium 139 0.03347 No No Yes [Parametric][General.evolution]Average_dN_with_Chimpanzee 96 0.03338 No No Yes [Parametric][General.AAC]Hydrophilic 136 0.03330 No No Yes [Parametric][General.network]NeighborhoodConnectivity 534 0.03325 No No Yes [Parametric][General.AAC]Hydrophobic 134 0.03318 No No Yes [Nonparametric][General.tissue]BTO:0000511 345 0.03222 No No Yes [Nonparametric][General.tissue]BTO:0001388 525 0.03216 No No Yes [Nonparametric][General.tissue]BTO:0000080 305 0.03205 No No Yes [Nonparametric][General.tissue]BTO:0000254 328 0.03176 No No Yes [Nonparametric][VIP.MTF]D-L-K-D 152 0.03122 No No Yes [Nonparametric][VIP.MTF]K-K-E-P 154 0.03122 No No Yes [Nonparametric][VIP.MTF]GD-M 161 0.03118 No No Yes [Nonparametric][VIP.MTF]T-E-E-T 160 0.03117 No No Yes [Nonparametric][VIP.MTF]K-G-K-G 156 0.03100 No No Yes [Nonparametric][General.tissue]BTO:0000082 307 0.03096 No No Yes [Nonparametric][General.tissue]BTO:0003096 431 0.03096 No No Yes [Nonparametric][VIP.MTF]E-DL-K 158 0.03080 No No Yes [Nonparametric][VIP.MTF]EK-A-K 149 0.03075 No No Yes [Nonparametric][VIP.MTF]R-MD 165 0.03064 No No Yes [Nonparametric][General.GOBProot]GO:0040011 254 0.03061 No No Yes [Nonparametric][VIP.MTF]EL-A-K 168 0.03060 No No Yes [Nonparametric][VIP.MTF]E-MN 157 0.03060 No No Yes [Nonparametric][VIP.MTF]G-G-T-T 163 0.03054 No No Yes [Nonparametric][VIP.MTF]G-K-K-V 155 0.03039 No No Yes [Nonparametric][General.codon]TGG_(W) 78 0.03038 No No Yes [Nonparametric][VIP.MTF]EFK 166 0.03037 No No Yes [Nonparametric][VIP.MTF]F-L-K-K 177 0.03033 No No Yes [Nonparametric][General.GOMFroot]GO:0060089 275 0.03031 No No Yes [Nonparametric][VIP.MTF]AIN 198 0.03022 No No Yes [Nonparametric][VIP.MTF]D-E-A-K 180 0.03011 No No Yes [Nonparametric][VIP.MTF]E-KA-K 179 0.02999 No No Yes [Nonparametric][VIP.MTF]DA-M 185 0.02992 No No Yes [Nonparametric][VIP.MTF]EK-EK 186 0.02990 No No Yes [Nonparametric][VIP.MTF]A-K-E-V 184 0.02989 No No Yes [Nonparametric][VIP.MTF]A-K-E-G 182 0.02981 No No Yes [Nonparametric][VIP.MTF]D-V-E-K 188 0.02978 No No Yes [Nonparametric][VIP.MTF]G-K-K-G 162 0.02973 No No Yes [Nonparametric][General.tissue]BTO:0000058 304 0.02968 No No Yes [Nonparametric][VIP.MTF]D-ED-D 183 0.02964 No No Yes [Nonparametric][General.tissue]BTO:0000282 330 0.02939 No No Yes [Nonparametric][VIP.MTF]AK-L-E 191 0.02939 No No Yes [Nonparametric][VIP.MTF]A-K-K-G 178 0.02932 No No Yes [Nonparametric][VIP.MTF]A-V-S-K 195 0.02913 No No Yes [Nonparametric][VIP.MTF]A-K-K-V 203 0.02903 No No Yes [Nonparametric][VIP.MTF]A-D-K-L 196 0.02901 No No Yes [Nonparametric][VIP.MTF]DDR 173 0.02892 No No Yes [Nonparametric][VIP.MTF]A-K-LE 181 0.02884 No No Yes [Nonparametric][VIP.MTF]E-D-LK 174 0.02882 No No Yes [Nonparametric][VIP.MTF]A-K-V-K 159 0.02880 No No Yes [Nonparametric][VIP.MTF]EKE-K 148 0.02864 No No Yes [Nonparametric][VIP.MTF]D-D-ED 187 0.02859 No No Yes [Nonparametric][VIP.MTF]D-E-V-K 164 0.02850 No No Yes [Nonparametric][VIP.MTF]A-V-V-K 172 0.02845 No No Yes [Nonparametric][VIP.MTF]AE-K-K 176 0.02844 No No Yes [Nonparametric][VIP.MTF]E-AK-K 147 0.02827 No No Yes [Nonparametric][VIP.MTF]AE-K-E 171 0.02801 No No Yes [Nonparametric][VIP.MTF]D-Q-L-K 151 0.02793 No No Yes [Nonparametric][VIP.MTF]A-E-D-D 207 0.02786 No No No [Nonparametric][VIP.MTF]A-K-KK 167 0.02782 No No No [Nonparametric][VIP.MTF]AEM 211 0.02777 No No No [Nonparametric][VIP.MTF]A-G-A-K 192 0.02771 No No No [Nonparametric][VIP.MTF]AK-K-K 202 0.02762 No No No [Nonparametric][VIP.MTF]A-A-N-S 200 0.02746 No No No [Parametric][General.evolution]dN/dS 95 0.02744 No No No [Nonparametric][VIP.MTF]A-A-E-I 204 0.02740 No No No [Nonparametric][VIP.MTF]AA-V-P 221 0.02736 No No No [Nonparametric][VIP.MTF]A-EAL 210 0.02733 No No No [Nonparametric][General.tissue]BTO:0000083 308 0.02733 No No No [Parametric][General.network]AverageShortestPathLength 528 0.02722 No No No [Nonparametric][VIP.MTF]A-EK-K 197 0.02717 No No No [Nonparametric][VIP.MTF]A-K-K-Q 170 0.02715 No No No [Nonparametric][VIP.MTF]A-AA-K 215 0.02682 No No No [Nonparametric][VIP.MTF]A-A-I-G 209 0.02682 No No No [Nonparametric][VIP.MTF]A-A-KL 190 0.02663 No No No [Nonparametric][VIP.MTF]A-D-D-L 216 0.02660 No No No [Nonparametric][VIP.MTF]A-D-D-E 153 0.02645 No No No [Nonparametric][General.tissue]BTO:0000081 306 0.02640 No No No [Nonparametric][VIP.MTF]AAA-AA 229 0.02633 No No No [Nonparametric][VIP.MTF]AA-AE 226 0.02600 No No No [Nonparametric][VIP.MTF]A-A-VV 219 0.02588 No No No [Nonparametric][VIP.MTF]A-EA-K 193 0.02586 No No No [Nonparametric][VIP.MTF]A-A-AK 217 0.02582 No No No [Nonparametric][VIP.MTF]A-D-A-R 213 0.02580 No No No [Nonparametric][VIP.MTF]AA-E-K 189 0.02576 No No No [Nonparametric][VIP.MTF]AA-EA 218 0.02573 No No No [Nonparametric][VIP.MTF]AA-K-A 212 0.02571 No No No [Nonparametric][VIP.MTF]AA-E-V 227 0.02565 No No No [Nonparametric][VIP.MTF]AA-V-E 224 0.02548 No No No [Nonparametric][General.GOMFroot]GO:0005215 267 0.02547 No No No [Nonparametric][VIP.MTF]A-E-A-I 175 0.02543 No No No [Nonparametric][VIP.MTF]AA-R-E 228 0.02534 No No No [Nonparametric][VIP.MTF]AK-K-E 145 0.02522 No No No [Nonparametric][VIP.MTF]AE-A-K 201 0.02518 No No No [Nonparametric][VIP.MTF]AK-A-E 146 0.02506 No No No [Nonparametric][VIP.MTF]AA-AAA 223 0.02504 No No No [Nonparametric][VIP.MTF]A-AE-K 208 0.02452 No No No [Nonparametric][General.tissue]BTO:0001491 421 0.02448 No No No [Nonparametric][VIP.MTF]A-A-KE 205 0.02427 No No No [Nonparametric][General.tissue]BTO:0003091 429 0.02414 No No No [Nonparametric][VIP.MTF]A-A-E-N 206 0.02412 No No No [Nonparametric][VIP.MTF]A-A-KK 169 0.02377 No No No [Nonparametric][VIP.MTF]AA-K-K 150 0.02347 No No No [Nonparametric][VIP.MTF]A-A-D-K 199 0.02339 No No No [Nonparametric][VIP.MTF]AA-K-E 194 0.02328 No No No [Nonparametric][General.tissue]BTO:0001488 418 0.02326 No No No [Nonparametric][VIP.MTF]AAE-L 222 0.02261 No No No [Nonparametric][General.tissue]BTO:0000522 346 0.02257 No No No [Nonparametric][General.GOBProot]GO:0022610 249 0.02242 No No No [Nonparametric][VIP.MTF]AA-AT 225 0.02240 No No No [Nonparametric][General.GOCCroot]GO:0044456 296 0.02209 No No No [Nonparametric][VIP.MTF]AA-EE 220 0.02176 No No No [Nonparametric][VIP.MTF]AAE-E 214 0.02152 No No No [Nonparametric][General.GOMFroot]GO:0005198 266 0.02108 No No No [Nonparametric][General.GOCCroot]GO:0045202 298 0.01928 No No No [Nonparametric][General.tissue]BTO:0000042 302 0.01692 No No No [Nonparametric][General.tissue]BTO:0001489 419 0.01692 No No No [Nonparametric][General.GOBProot]GO:0008283 243 0.01690 No No No [Nonparametric][General.GOCCroot]GO:0099080 301 0.01630 No No No [Nonparametric][General.GOBProot]GO:0023052 250 0.01548 No No No [Nonparametric][General.GOBProot]GO:0007610 241 0.01420 No No No [Nonparametric][General.tissue]BTO:0001208 518 0.01033 No No No [Nonparametric][General.GOBProot]GO:0048511 257 0.00830 No No No [Nonparametric][General.GOBProot]GO:0040007 253 0.00805 No No No [Nonparametric][General.tissue]BTO:0000368 526 0.00718 No No No [Nonparametric][General.GOCCroot]GO:0044217 291 0.00409 No No No [Nonparametric][General.GOCCroot]GO:0005623 282 0.00372 No No No [Nonparametric][General.GOBProot]GO:0098754 264 0.00357 No No No [Nonparametric][General.GOMFroot]GO:0016209 269 0.00305 No No No [Nonparametric][General.GOMFroot]GO:0038024 271 0.00304 No No No [Nonparametric][General.GOBProot]GO:0001906 237 0.00239 No No No [Nonparametric][General.GOCCroot]GO:0009295 283 0.00200 No No No [Nonparametric][General.GOMFroot]GO:0140104 278 0.00199 No No No [Nonparametric][General.GOMFroot]GO:0045182 273 0.00159 No No No [Nonparametric][General.GOBProot]GO:0043473 255 0.00140 No No No [Nonparametric][General.GOMFroot]GO:0044183 272 0.00098 No No No [Nonparametric][General.GOBProot]GO:0000003 236 0.00038 No No No [Nonparametric][General.GOBProot]GO:0098743 263 0.00029 No No No [Nonparametric][General.GOMFroot]GO:0031386 270 0.00018 No No No [Nonparametric][General.GOBProot]GO:0019740 247 0.00010 No No No [Nonparametric][General.codon]ATG_(M) 39 0.00007 No No No [Nonparametric][General.GOBProot]GO:0044848 256 0.00003 No No No [Nonparametric][General.GOBProot]GO:0006791 239 0.00000 No No No [Nonparametric][General.GOBProot]GO:0006794 240 0.00000 No No No [Nonparametric][General.GOBProot]GO:0009758 244 0.00000 No No No [Nonparametric][General.GOBProot]GO:0015976 246 0.00000 No No No [Nonparametric][General.GOMFroot]GO:0045735 274 0.00000 No No No [Nonparametric][General.GOMFroot]GO:0090729 276 0.00000 No No No [Nonparametric][General.GOMFroot]GO:0140299 280 0.00000 No No No [Nonparametric][General.GOCCroot]GO:0019012 285 0.00000 No No No [Nonparametric][General.GOCCroot]GO:0044215 290 0.00000 No No No [Nonparametric][General.GOCCroot]GO:0044423 294 0.00000 No No No [Nonparametric][General.GOCCroot]GO:0055044 299 0.00000 No No No [Nonparametric][General.GOCCroot]GO:0097423 300 0.00000 No No No #Features for predicting the directionality of HIV-1-host PPIs. Feature Feature index Importance coefficient Used by PreDIR-164 Used by PreDIR-129 [Nonparametric][General.GOMFroot]GO:0003824 301 0.13347 No Yes [Nonparametric][General.tissue]BTO:0000615 390 0.12762 No Yes [Nonparametric][General.GOBProot]GO:0050896 294 0.12712 No Yes [Nonparametric][General.tissue]BTO:0000776 405 0.12705 No Yes [Nonparametric][General.tissue]BTO:0000545 480 0.12647 No No [Nonparametric][General.tissue]BTO:0001001 419 0.12635 No No [Nonparametric][General.GOBProot]GO:0008152 278 0.12594 No No [Nonparametric][General.tissue]BTO:0004410 469 0.12573 No No [Nonparametric][General.tissue]BTO:0005453 470 0.12567 No No [Nonparametric][General.codon]TGA_(N/A) 91 0.12551 No No [Nonparametric][General.tissue]BTO:0000876 409 0.12551 No No [Nonparametric][General.tissue]BTO:0000878 410 0.12551 No No [Nonparametric][General.tissue]BTO:0001044 420 0.12551 No No [Nonparametric][General.tissue]BTO:0001433 447 0.12551 No No [Nonparametric][General.tissue]BTO:0001441 448 0.12551 No No [Nonparametric][General.tissue]BTO:0001260 486 0.12512 No No [Nonparametric][General.tissue]BTO:0000293 368 0.12463 No No [Nonparametric][General.tissue]BTO:0000243 476 0.12415 No No [Nonparametric][General.tissue]BTO:0000553 384 0.12399 No No [Nonparametric][Direction.HIV-1]tat 570 0.12387 No No [Nonparametric][General.GOCCroot]GO:0016020 320 0.12335 No No [Nonparametric][General.tissue]BTO:0000772 481 0.12322 No No [Nonparametric][General.tissue]BTO:0001528 487 0.12322 No No [Nonparametric][General.tissue]BTO:0002878 491 0.12322 No No [Nonparametric][General.tissue]BTO:0002042 461 0.12320 No No [Nonparametric][General.tissue]BTO:0000214 357 0.12312 No No [Nonparametric][General.tissue]BTO:0000216 358 0.12312 No No [Nonparametric][General.tissue]BTO:0001490 456 0.12312 No No [Nonparametric][General.tissue]BTO:0002008 460 0.12312 No No [Nonparametric][General.tissue]BTO:0000903 483 0.12307 No No [Nonparametric][General.tissue]BTO:0001703 490 0.12291 No No [Nonparametric][General.tissue]BTO:0001702 489 0.12285 No No [Nonparametric][General.tissue]BTO:0000497 498 0.12264 No No [Nonparametric][General.tissue]BTO:0000862 482 0.12248 No No [Nonparametric][General.tissue]BTO:0001629 488 0.12248 No No [Nonparametric][General.tissue]BTO:0000782 406 0.12233 No No [Nonparametric][General.tissue]BTO:0000175 497 0.12094 No No [Nonparametric][General.tissue]BTO:0001067 509 0.12094 No No [Nonparametric][General.tissue]BTO:0002860 464 0.12077 No No [Nonparametric][General.GOCCroot]GO:0044425 331 0.12066 No No [Nonparametric][General.tissue]BTO:0000914 484 0.12034 No No [Nonparametric][General.tissue]BTO:0004716 492 0.12034 No No [Nonparametric][General.tissue]BTO:0004717 493 0.12034 No No [Nonparametric][General.tissue]BTO:0000379 478 0.11986 No No [Nonparametric][General.tissue]BTO:0002417 463 0.11969 No No [Nonparametric][General.tissue]BTO:0000289 477 0.11948 No No [Nonparametric][General.tissue]BTO:0000997 518 0.11944 No No [Nonparametric][General.GOBProot]GO:0051179 295 0.11877 No No [Nonparametric][General.tissue]BTO:0002807 547 0.11835 No No [Nonparametric][General.tissue]BTO:0000131 495 0.11762 No No [Nonparametric][General.tissue]BTO:0000132 496 0.11762 No No [Nonparametric][General.tissue]BTO:0000235 529 0.11720 No No [Nonparametric][General.tissue]BTO:0001539 524 0.11710 No No [Nonparametric][General.GOCCroot]GO:0044422 329 0.11691 No No [Nonparametric][General.tissue]BTO:0001374 440 0.11375 No No [Nonparametric][General.tissue]BTO:0001042 533 0.11361 No No [Nonparametric][General.tissue]BTO:0003399 548 0.11361 No No [Nonparametric][General.GOCCroot]GO:0032991 324 0.11360 No No [Nonparametric][General.tissue]BTO:0000650 500 0.11352 No No [Nonparametric][General.tissue]BTO:0000991 507 0.11352 No No [Nonparametric][General.tissue]BTO:0000601 388 0.11325 No No [Nonparametric][General.tissue]BTO:0001234 429 0.11273 No No [Nonparametric][General.tissue]BTO:0001175 485 0.11237 No No [Nonparametric][General.tissue]BTO:0001422 445 0.11173 No No [Nonparametric][General.tissue]BTO:0000138 527 0.11156 No No [Nonparametric][General.tissue]BTO:0002191 540 0.11156 No No [Nonparametric][General.tissue]BTO:0004676 551 0.11156 No No [Nonparametric][General.tissue]BTO:0000416 555 0.11149 No No [Nonparametric][General.tissue]BTO:0000419 556 0.11149 No No [Nonparametric][General.tissue]BTO:0001845 557 0.11149 No No [Nonparametric][General.tissue]BTO:0002922 558 0.11149 No No [Nonparametric][General.tissue]BTO:0004726 515 0.11126 No No [Nonparametric][General.tissue]BTO:0002495 544 0.11081 No No [Nonparametric][General.tissue]BTO:0003975 549 0.11081 No No [Nonparametric][General.tissue]BTO:0003976 550 0.11081 No No [Nonparametric][General.tissue]BTO:0000113 526 0.10993 No No [Nonparametric][General.tissue]BTO:0001028 532 0.10993 No No [Nonparametric][General.tissue]BTO:0001325 535 0.10993 No No [Nonparametric][General.tissue]BTO:0001333 536 0.10993 No No [Nonparametric][General.tissue]BTO:0001832 538 0.10993 No No [Nonparametric][General.tissue]BTO:0001834 539 0.10993 No No [Nonparametric][General.tissue]BTO:0002507 545 0.10993 No No [Nonparametric][General.tissue]BTO:0000879 411 0.10892 No No [Nonparametric][General.tissue]BTO:0001442 449 0.10892 No No [Nonparametric][General.tissue]BTO:0001365 537 0.10825 No No [Nonparametric][General.GOBProot]GO:0071840 298 0.10816 No No [Nonparametric][General.tissue]BTO:0000980 417 0.10791 No No [Nonparametric][General.tissue]BTO:0001421 444 0.10780 No No [Nonparametric][General.GOBProot]GO:0065007 297 0.10755 No No [Nonparametric][General.tissue]BTO:0000045 472 0.10733 No No [Nonparametric][Direction.HIV-1]env 567 0.10730 No No [Nonparametric][General.tissue]BTO:0000662 394 0.10717 No No [Nonparametric][General.tissue]BTO:0001049 421 0.10636 No No [Nonparametric][General.tissue]BTO:0000149 474 0.10586 No No [Nonparametric][General.tissue]BTO:0000775 404 0.10584 No No [Nonparametric][General.tissue]BTO:0001096 424 0.10584 No No [Nonparametric][General.tissue]BTO:0000439 479 0.10529 No No [Nonparametric][General.tissue]BTO:0001311 534 0.10504 No No [Nonparametric][General.tissue]BTO:0002252 543 0.10481 No No [Nonparametric][General.tissue]BTO:0000580 499 0.10460 No No [Nonparametric][General.tissue]BTO:0000737 501 0.10460 No No [Nonparametric][General.tissue]BTO:0000739 502 0.10460 No No [Nonparametric][General.tissue]BTO:0000741 503 0.10460 No No [Nonparametric][General.tissue]BTO:0000773 504 0.10460 No No [Nonparametric][General.tissue]BTO:0000873 505 0.10460 No No [Nonparametric][General.tissue]BTO:0001035 508 0.10460 No No [Nonparametric][General.tissue]BTO:0001271 511 0.10460 No No [Nonparametric][General.tissue]BTO:0002144 513 0.10460 No No [Nonparametric][General.tissue]BTO:0002504 514 0.10460 No No [Nonparametric][General.tissue]BTO:0002731 546 0.10450 No No [Nonparametric][General.tissue]BTO:0000202 475 0.10433 No No [Nonparametric][General.GOBProot]GO:0032502 288 0.10421 No No [Nonparametric][General.tissue]BTO:0000211 528 0.10406 No No [Nonparametric][General.tissue]BTO:0000418 530 0.10406 No No [Parametric][General.network]Eccentricity 580 0.10323 No No [Nonparametric][General.tissue]BTO:0001101 522 0.10295 No No [Nonparametric][General.tissue]BTO:0000041 525 0.10294 No No [Nonparametric][General.tissue]BTO:0000758 531 0.10294 No No [Nonparametric][General.tissue]BTO:0000408 372 0.10276 No No [Nonparametric][General.tissue]BTO:0000484 379 0.10196 No No [Nonparametric][General.tissue]BTO:0000106 494 0.10118 No No [Nonparametric][General.tissue]BTO:0001231 510 0.10118 No No [Nonparametric][General.tissue]BTO:0000961 506 0.10005 No No [Nonparametric][General.tissue]BTO:0001362 512 0.10005 No No [Nonparametric][General.tissue]BTO:0000886 412 0.09978 No No [Nonparametric][General.tissue]BTO:0000751 399 0.09895 No No [Nonparametric][General.tissue]BTO:0000574 387 0.09765 No No [Nonparametric][General.tissue]BTO:0001279 432 0.09654 No No [Nonparametric][General.GOCCroot]GO:0044421 328 0.09595 No No [Nonparametric][General.GOCCroot]GO:0043226 325 0.09293 No No [Nonparametric][General.tissue]BTO:0002246 541 0.09238 No No [Nonparametric][General.tissue]BTO:0002250 542 0.09238 No No [Nonparametric][General.codon]TAA_(N/A) 89 0.09212 No No [Nonparametric][General.codon]TAG_(N/A) 90 0.09161 No No [Nonparametric][General.tissue]BTO:0001123 559 0.09114 No No [Nonparametric][General.tissue]BTO:0001264 560 0.09114 No No [Nonparametric][General.tissue]BTO:0000925 519 0.08872 No No [Nonparametric][General.tissue]BTO:0000926 520 0.08815 No No [Nonparametric][General.tissue]BTO:0001072 521 0.08815 No No [Nonparametric][General.tissue]BTO:0001104 523 0.08815 No No [Nonparametric][General.tissue]BTO:0001368 438 0.08805 No No [Nonparametric][General.tissue]BTO:0000089 347 0.08779 No No [Nonparametric][General.GOBProot]GO:0002376 274 0.08634 No No [Nonparametric][General.tissue]BTO:0000136 349 0.08604 No No [Nonparametric][General.tissue]BTO:0001340 435 0.08604 No No [Nonparametric][General.GOBProot]GO:0032501 287 0.08480 No No [Nonparametric][General.tissue]BTO:0001487 453 0.08423 No No [Nonparametric][General.tissue]BTO:0000614 389 0.08253 No No [Nonparametric][General.tissue]BTO:0001387 442 0.08089 No No [Nonparametric][General.tissue]BTO:0000342 369 0.07926 No No [Nonparametric][General.tissue]BTO:0001158 427 0.07669 No No [Nonparametric][General.tissue]BTO:0001355 436 0.07597 No No [Nonparametric][General.tissue]BTO:0000232 361 0.06958 No No [Nonparametric][General.GOCCroot]GO:0005576 317 0.06781 No No [Nonparametric][General.tissue]BTO:0000672 396 0.06748 No No [Nonparametric][General.tissue]BTO:0000673 397 0.06748 No No [Nonparametric][General.tissue]BTO:0000146 352 0.06674 No No [Nonparametric][Direction.HIV-1]nef 568 0.06520 No No [Parametric][Direction.MTF]MTF_occurrence 266 0.06395 Yes Yes [Nonparametric][General.tissue]BTO:0000141 350 0.06296 No No [Parametric][General.evolution]Average_dS 94 0.06131 No No [Nonparametric][General.tissue]BTO:0000445 376 0.06062 No No [Nonparametric][General.tissue]BTO:0000765 403 0.05928 No No [Nonparametric][General.tissue]BTO:0001203 428 0.05928 No No [Nonparametric][General.tissue]BTO:0000199 355 0.05801 No No [Nonparametric][General.GOMFroot]GO:0005488 304 0.05671 No No [Nonparametric][General.tissue]BTO:0000959 415 0.05646 No No [Nonparametric][General.GOBProot]GO:0009987 281 0.05606 No No [Nonparametric][General.tissue]BTO:0001103 425 0.05555 No No [Nonparametric][General.tissue]BTO:0000784 407 0.05550 No No [Parametric][General.evolution]Average_dN 93 0.05462 No No [Nonparametric][General.tissue]BTO:0001253 431 0.05384 No No [Nonparametric][General.GOBProot]GO:0051704 296 0.05379 No No [Nonparametric][Direction.HIV-1]gag 565 0.05340 No No [Nonparametric][General.GOMFroot]GO:0098772 313 0.05316 No No [Nonparametric][General.tissue]BTO:0001379 441 0.05191 No No [Nonparametric][General.tissue]BTO:0000420 373 0.05162 No No [Nonparametric][General.tissue]BTO:0000828 408 0.05162 No No [Nonparametric][General.tissue]BTO:0000928 414 0.05083 No No [Parametric][General.codon]GGA_(G) 87 0.05067 No No [Nonparametric][General.tissue]BTO:0001090 423 0.04994 No No [Nonparametric][General.tissue]BTO:0000421 374 0.04991 No No [Parametric][General.codon]AGA_(R) 83 0.04986 No No [Parametric][General.codon]TCG_(S) 47 0.04981 No No [Parametric][General.codon]TTA_(L) 30 0.04943 No No [Parametric][General.DNA]AT(CG) 9 0.04914 No No [Parametric][General.codon]GAA_(E) 74 0.04844 No No [Nonparametric][General.tissue]BTO:0001281 433 0.04839 No No [Parametric][General.codon]GAG_(E) 75 0.04823 No No [Parametric][General.evolution]dN/dS_with_Chimpanzee 98 0.04823 No No [Nonparametric][General.GOMFroot]GO:0140110 315 0.04817 No No [Nonparametric][General.tissue]BTO:0000365 371 0.04760 No No [Parametric][General.codon]ATA_(I) 38 0.04724 No No [Parametric][General.DNA]ApT% 13 0.04701 No No [Parametric][General.codon]CCG_(P) 53 0.04699 No No [Parametric][General.DNA]TpT% 17 0.04698 No No [Parametric][General.codon]AAA_(K) 70 0.04685 No No [Parametric][General.codon]AAG_(K) 71 0.04685 No No [Parametric][General.DNA]TpA% 16 0.04661 No No [Parametric][General.codon]GCG_(A) 63 0.04655 No No [Parametric][General.codon]CTG_(L) 35 0.04635 No No [Nonparametric][Direction.MTF]L-D-T-R 146 0.04610 Yes Yes [Parametric][General.evolution]ParalogueNO. 92 0.04602 No No [Parametric][General.evolution]dN/dS_with_Orangutan 104 0.04578 No No [Nonparametric][General.tissue]BTO:0001424 446 0.04559 No No [Parametric][General.codon]CAG_(Q) 67 0.04544 No No [Parametric][General.DNA]G(ATC) 8 0.04517 No No [Parametric][General.codon]CAA_(Q) 66 0.04505 No No [Nonparametric][General.tissue]BTO:0000988 418 0.04503 No No [Nonparametric][General.tissue]BTO:0000140 473 0.04503 No No [Nonparametric][General.tissue]BTO:0000634 391 0.04500 No No [Nonparametric][General.GOCCroot]GO:0031974 323 0.04495 No No [Parametric][General.codon]GGC_(G) 86 0.04459 No No [Parametric][General.DNA]GpG% 27 0.04449 No No [Parametric][General.splicing]ExonNo. 3 0.04439 No No [Parametric][General.DNA]A(TCG) 5 0.04439 No No [Parametric][General.DNA]ApA% 12 0.04434 No No [Parametric][General.codon]GTA_(V) 42 0.04429 No No [Parametric][General.evolution]dN/dS_with_Gorilla 101 0.04424 No No [Nonparametric][General.tissue]BTO:0000047 339 0.04415 No No [Parametric][General.codon]ATC_(I) 37 0.04409 No No [Parametric][General.codon]GTT_(V) 40 0.04406 No No [Parametric][General.DNA]GpC% 26 0.04398 No No [Parametric][General.DNA]C(ATG) 7 0.04375 No No [Parametric][General.Disorder]Espritz_50-length_disorder 270 0.04375 Yes Yes [Parametric][General.evolution]dN/dS_with_Gibbon 107 0.04373 No No [Parametric][General.codon]GCC_(A) 61 0.04372 No No [Nonparametric][General.tissue]BTO:0000975 416 0.04372 No No [Parametric][General.DNA]CpG% 23 0.04363 No No [Nonparametric][General.tissue]BTO:0000449 377 0.04361 No No [Nonparametric][General.tissue]BTO:0001078 422 0.04361 No No [Nonparametric][Direction.HIV-1]vpr 572 0.04351 No No [Parametric][General.Disorder]IUPred_disorder_coverage% 271 0.04331 Yes Yes [Parametric][General.Disorder]Espritz_30-length_disorder 269 0.04326 Yes Yes [Parametric][General.codon]GAC_(D) 73 0.04274 No No [Parametric][General.codon]ACG_(T) 57 0.04269 No No [Nonparametric][Direction.MTF]P-E-R-V 145 0.04264 Yes Yes [Parametric][General.codon]TTC_(F) 29 0.04252 No No [Parametric][General.network]ClusteringCoefficient 578 0.04250 No No [Parametric][General.codon]GAT_(D) 72 0.04249 No No [Parametric][General.codon]CGG_(R) 82 0.04243 No No [Parametric][General.codon]CAT_(H) 64 0.04241 No No [Parametric][General.network]TopologicalCoefficient 584 0.04219 No No [Nonparametric][Direction.MTF]P-D-SS 148 0.04207 Yes Yes [Parametric][General.splicing]TranscriptNo. 1 0.04204 No No [Parametric][General.codon]GCA_(A) 62 0.04201 No No [Parametric][General.codon]GTG_(V) 43 0.04189 No No [Parametric][General.DNA]T(ACG) 6 0.04180 No No [Parametric][General.codon]AAT_(N) 68 0.04175 No No [Parametric][General.codon]CTA_(L) 34 0.04164 No No [Parametric][General.codon]TTT_(F) 28 0.04163 No No [Nonparametric][General.tissue]BTO:0001129 426 0.04150 No No [Parametric][General.DNA]CpC% 22 0.04148 No No [Parametric][General.AAC]Huge/Aromatic 141 0.04148 Yes Yes [Nonparametric][Direction.MTF]L-Y-L-E 162 0.04127 Yes Yes [Parametric][General.Disorder]Espritz_disorder_coverage% 268 0.04125 Yes Yes [Parametric][General.codon]AAC_(N) 69 0.04116 No No [Parametric][General.codon]CGT_(R) 79 0.04115 No No [Parametric][General.codon]CCT_(P) 50 0.04092 No No [Parametric][General.codon]CGC_(R) 80 0.04092 No No [Nonparametric][General.tissue]BTO:0000887 413 0.04084 No No [Nonparametric][General.tissue]BTO:0001369 439 0.04084 No No [Nonparametric][General.tissue]BTO:0001485 451 0.04084 No No [Parametric][General.codon]TCC_(S) 45 0.04077 No No [Parametric][General.splicing]UET 4 0.04073 No No [Parametric][General.network]NeighborhoodConnectivity 581 0.04055 No No [Nonparametric][General.tissue]BTO:0001307 434 0.04053 No No [Nonparametric][Direction.MTF]L-AK-L 177 0.04049 Yes Yes [Nonparametric][General.tissue]BTO:0001493 458 0.04048 No No [Parametric][General.AAC]AA_W 125 0.04043 Yes Yes [Parametric][General.splicing]CodingTranscriptNo. 2 0.04025 No No [Parametric][General.codon]ACC_(T) 55 0.04022 No No [Parametric][General.codon]CAC_(H) 65 0.04015 No No [Parametric][General.codon]CTC_(L) 33 0.04013 No No [Parametric][General.codon]AGC_(S) 49 0.04009 No No [Nonparametric][Direction.MTF]G-L-S-Y 208 0.04000 Yes Yes [Parametric][General.codon]ACA_(T) 56 0.03987 No No [Parametric][General.tissue]Tissue_occurence 564 0.03974 No No [Parametric][General.codon]CCC_(P) 51 0.03970 No No [Parametric][General.AAC]AA_F 121 0.03965 Yes Yes [Parametric][General.AAC]AA_I 117 0.03949 Yes Yes [Parametric][General.codon]TCA_(S) 46 0.03947 No No [Nonparametric][General.tissue]BTO:0001418 443 0.03944 No No [Parametric][General.codon]GGG_(G) 88 0.03931 No No [Parametric][General.codon]CTT_(L) 32 0.03927 No No [Nonparametric][General.GOMFroot]GO:0060089 311 0.03917 No No [Parametric][General.AAC]AA_H 116 0.03908 Yes Yes [Nonparametric][General.tissue]BTO:0001486 452 0.03907 No No [Nonparametric][Direction.MTF]Q-K-P-L 161 0.03900 Yes Yes [Parametric][General.AAC]Aliphatic 128 0.03895 Yes Yes [Parametric][General.codon]TAT_(Y) 58 0.03888 No No [Parametric][General.codon]CCA_(P) 52 0.03887 No No [Nonparametric][General.tissue]BTO:0000651 393 0.03880 No No [Nonparametric][Direction.MTF]KA-L-V 196 0.03860 Yes Yes [Nonparametric][General.tissue]BTO:0000759 401 0.03858 No No [Parametric][General.AAC]AA_Y 126 0.03856 Yes Yes [Parametric][General.evolution]Average_dS_with_Orangutan 103 0.03850 No No [Parametric][General.AAC]AA_A 108 0.03846 Yes Yes [Nonparametric][Direction.MTF]S-LG-I 187 0.03840 Yes Yes [Nonparametric][Direction.MTF]RS-G-S 152 0.03840 Yes Yes [Nonparametric][Direction.MTF]L-S-HL 178 0.03834 Yes Yes [Nonparametric][General.GOCCroot]GO:0044456 332 0.03832 No No [Parametric][General.AAC]AA_Q 114 0.03828 Yes Yes [Nonparametric][Direction.MTF]R-RS-L 153 0.03827 Yes Yes [Nonparametric][Direction.MTF]YLF 171 0.03818 Yes Yes [Nonparametric][Direction.MTF]L-PD-S 210 0.03814 Yes Yes [Nonparametric][Direction.MTF]SP-R-L 170 0.03804 Yes Yes [Nonparametric][Direction.MTF]RFV 179 0.03801 Yes Yes [Parametric][General.codon]GCT_(A) 60 0.03793 No No [Nonparametric][Direction.MTF]N-L-R-S 163 0.03783 Yes Yes [Parametric][General.codon]ATT_(I) 36 0.03777 No No [Parametric][General.AAC]AA_M 120 0.03773 Yes Yes [Parametric][General.AAC]AA_S 123 0.03772 Yes Yes [Nonparametric][Direction.MTF]D-L-L-Y 173 0.03771 Yes Yes [Parametric][General.AAC]AA_N 110 0.03763 Yes Yes [Nonparametric][Direction.MTF]AS-L-P 194 0.03760 Yes Yes [Nonparametric][Direction.MTF]P-G-Q-S 186 0.03749 Yes Yes [Nonparametric][Direction.MTF]K-R-Q-L 182 0.03743 Yes Yes [Parametric][General.codon]AGT_(S) 48 0.03742 No No [Nonparametric][Direction.MTF]D-P-S-V 206 0.03741 Yes Yes [Nonparametric][General.tissue]BTO:0000493 380 0.03741 No No [Nonparametric][Direction.MTF]LA-LE 168 0.03740 Yes Yes [Nonparametric][Direction.MTF]LD-K-L 172 0.03740 Yes Yes [Nonparametric][Direction.MTF]Q-S-S-K 164 0.03740 Yes Yes [Parametric][General.AAC]Amide 133 0.03730 Yes Yes [Parametric][General.codon]TAC_(Y) 59 0.03721 No No [Parametric][General.AAC]Medium 139 0.03706 Yes Yes [Nonparametric][Direction.MTF]K-S-I-E 174 0.03705 Yes Yes [Parametric][General.codon]GTC_(V) 41 0.03703 No No [Parametric][General.DNA]ApG% 15 0.03701 No No [Nonparametric][General.tissue]BTO:0000233 362 0.03689 No No [Nonparametric][General.tissue]BTO:0000231 360 0.03673 No No [Nonparametric][General.tissue]BTO:0000239 363 0.03673 No No [Nonparametric][General.tissue]BTO:0000671 395 0.03664 No No [Nonparametric][Direction.MTF]D-P-R-A 189 0.03661 Yes Yes [Nonparametric][Direction.MTF]CG-F 227 0.03655 Yes Yes [Parametric][General.AAC]Tiny 137 0.03653 Yes Yes [Parametric][General.DNA]CpT% 21 0.03650 No No [Nonparametric][Direction.MTF]GFD 214 0.03648 Yes Yes [Parametric][General.DNA]ApC% 14 0.03648 No No [Nonparametric][Direction.MTF]D-D-L-R 232 0.03642 Yes Yes [Parametric][General.AAC]Nonpolar 144 0.03642 Yes Yes [Nonparametric][Direction.MTF]L-P-V-R 183 0.03641 Yes Yes [Parametric][General.AAC]Polar 143 0.03635 Yes Yes [Parametric][General.codon]TTG_(L) 31 0.03634 No No [Nonparametric][Direction.MTF]DPF 219 0.03634 Yes Yes [Parametric][General.evolution]Average_dN_with_Gibbon 105 0.03629 No No [Nonparametric][Direction.MTF]I-V-L-R 167 0.03629 Yes Yes [Nonparametric][Direction.MTF]S-L-IS 150 0.03627 Yes Yes [Parametric][General.codon]ACT_(T) 54 0.03620 No No [Nonparametric][Direction.MTF]R-S-G-P 159 0.03618 Yes Yes [Parametric][General.AAC]AA_V 127 0.03618 Yes Yes [Nonparametric][General.GOCCroot]GO:0030054 322 0.03613 No No [Nonparametric][Direction.MTF]T-SL-T 156 0.03608 Yes Yes [Parametric][General.AAC]AA_G 115 0.03607 Yes Yes [Parametric][General.evolution]Average_dS_with_Gibbon 106 0.03606 No No [Parametric][General.codon]CGA_(R) 81 0.03602 No No [Nonparametric][Direction.MTF]G-Q-E-A 195 0.03598 Yes Yes [Nonparametric][Direction.MTF]P-LL-K 169 0.03597 Yes Yes [Nonparametric][Direction.MTF]A-Q-G-P 217 0.03597 Yes Yes [Nonparametric][Direction.MTF]D-F-A-L 176 0.03589 Yes Yes [Parametric][General.AAC]Sulfur 130 0.03578 Yes Yes [Nonparametric][Direction.MTF]D-K-L-G 213 0.03572 Yes Yes [Nonparametric][Direction.MTF]FY-V 235 0.03566 Yes Yes [Nonparametric][General.tissue]BTO:0000174 354 0.03562 No No [Nonparametric][General.tissue]BTO:0000284 367 0.03562 No No [Parametric][General.AAC]AA_R 109 0.03555 Yes Yes [Nonparametric][General.tissue]BTO:0000084 345 0.03553 No No [Nonparametric][General.tissue]BTO:0000166 353 0.03553 No No [Nonparametric][General.tissue]BTO:0002273 462 0.03553 No No [Parametric][General.DNA]GpT% 25 0.03544 No No [Nonparametric][Direction.MTF]A-GT-A 203 0.03540 Yes Yes [Nonparametric][Direction.MTF]G-QL-S 165 0.03539 Yes Yes [Parametric][General.DNA]TpC% 18 0.03539 No No [Nonparametric][Direction.MTF]A-VL-R 238 0.03538 Yes Yes [Nonparametric][Direction.MTF]G-L-E-I 204 0.03531 Yes Yes [Parametric][General.AAC]AA_T 124 0.03521 Yes Yes [Parametric][General.AAC]Hydroxyl 131 0.03517 Yes Yes [Nonparametric][Direction.MTF]SL-I-S 180 0.03515 Yes Yes [Nonparametric][Direction.MTF]A-K-LG 226 0.03514 Yes Yes [Nonparametric][Direction.MTF]F-D-L-G 190 0.03511 Yes Yes [Nonparametric][Direction.MTF]G-G-A-Q 207 0.03510 Yes Yes [Nonparametric][Direction.MTF]LL-KE 209 0.03500 Yes Yes [Nonparametric][Direction.MTF]L-E-IS 199 0.03497 Yes Yes [Nonparametric][Direction.MTF]A-S-V-Q 231 0.03495 Yes Yes [Nonparametric][Direction.MTF]G-KL-L 229 0.03490 Yes Yes [Parametric][General.AAC]AA_D 111 0.03489 Yes Yes [Nonparametric][Direction.MTF]F-L-P-V 221 0.03486 Yes Yes [Parametric][General.DNA]AG(TC) 11 0.03486 No No [Parametric][General.AAC]Small 138 0.03484 Yes Yes [Nonparametric][Direction.MTF]LG-I-S 158 0.03483 Yes Yes [Nonparametric][Direction.MTF]F-H-M 155 0.03483 Yes Yes [Nonparametric][Direction.MTF]L-Q-AG 200 0.03480 Yes Yes [Nonparametric][Direction.MTF]GG-GL 192 0.03480 Yes Yes [Nonparametric][Direction.MTF]A-R-R-V 257 0.03475 Yes Yes [Nonparametric][Direction.MTF]DFF 154 0.03474 Yes Yes [Nonparametric][Direction.MTF]D-D-L-I 218 0.03470 Yes Yes [Parametric][General.codon]TCT_(S) 44 0.03465 No No [Parametric][General.codon]GGT_(G) 85 0.03464 No No [Parametric][General.DNA]CpA% 20 0.03455 No No [Parametric][General.codon]TGC_(C) 77 0.03451 No No [Nonparametric][Direction.MTF]G-SAA 151 0.03428 Yes Yes [Nonparametric][General.tissue]BTO:0001388 561 0.03425 No No [Parametric][General.network]AverageShortestPathLength 575 0.03424 No No [Parametric][General.DNA]TpG% 19 0.03424 No No [Nonparametric][General.tissue]BTO:0000431 375 0.03421 No No [Parametric][General.DNA]AC(TG) 10 0.03418 No No [Parametric][General.AAC]Hydrophilic 136 0.03416 Yes Yes [Nonparametric][Direction.MTF]D-F-G-S 228 0.03412 Yes Yes [Parametric][General.evolution]Average_dN_with_Orangutan 102 0.03409 No No [Parametric][General.DNA]GpA% 24 0.03408 No No [Parametric][General.AAC]AA_K 119 0.03398 Yes Yes [Nonparametric][Direction.MTF]KV-A-E 157 0.03398 Yes Yes [Parametric][General.evolution]Average_dS_with_Gorilla 100 0.03395 No No [Nonparametric][Direction.MTF]D-L-R-P 197 0.03388 Yes Yes [Nonparametric][Direction.MTF]E-K-V-G 234 0.03384 Yes Yes [Nonparametric][General.GOBProot]GO:0040011 290 0.03382 No No [Nonparametric][Direction.MTF]EK-V-S 233 0.03375 Yes Yes [Nonparametric][Direction.MTF]AVL-A 175 0.03371 Yes Yes [Nonparametric][Direction.MTF]A-KL-L 251 0.03371 Yes Yes [Parametric][General.codon]TGT_(C) 76 0.03370 No No [Parametric][General.AAC]AA_C 112 0.03370 Yes Yes [Nonparametric][Direction.MTF]A-LEK 247 0.03363 Yes Yes [Nonparametric][Direction.MTF]EK-E-D 220 0.03363 Yes Yes [Parametric][General.AAC]AA_P 122 0.03358 Yes Yes [Parametric][General.AAC]AA_L 118 0.03352 Yes Yes [Nonparametric][Direction.MTF]L-PS-E 211 0.03351 Yes Yes [Nonparametric][Direction.MTF]D-S-P-D 198 0.03349 Yes Yes [Nonparametric][Direction.MTF]L-R-I-G 147 0.03331 Yes Yes [Nonparametric][Direction.MTF]D-NM 185 0.03330 Yes Yes [Nonparametric][Direction.MTF]A-DS-L 216 0.03322 Yes Yes [Parametric][General.AAC]Neutral 135 0.03320 Yes Yes [Parametric][General.codon]AGG_(R) 84 0.03319 No No [Nonparametric][Direction.MTF]A-ELE 237 0.03315 Yes Yes [Nonparametric][Direction.MTF]G-LS-K 160 0.03301 Yes Yes [Nonparametric][Direction.MTF]FQS 222 0.03297 Yes Yes [Nonparametric][Direction.MTF]AL-EK 244 0.03283 Yes Yes [Nonparametric][Direction.MTF]A-Q-L-I 250 0.03279 Yes Yes [Nonparametric][General.tissue]BTO:0000478 378 0.03277 No No [Parametric][General.evolution]Average_dN_with_Gorilla 99 0.03274 No No [Parametric][General.AAC]Hydrophobic 134 0.03264 Yes Yes [Nonparametric][Direction.MTF]D-K-Q-E 149 0.03260 Yes Yes [Parametric][General.AAC]AA_E 113 0.03256 Yes Yes [Parametric][General.AAC]Basic/Positive_charged 129 0.03251 Yes Yes [Nonparametric][Direction.MTF]A-G-GR 242 0.03243 Yes Yes [Parametric][General.AAC]Large 140 0.03228 Yes Yes [Parametric][General.AAC]Uncharged 142 0.03220 Yes Yes [Nonparametric][Direction.MTF]A-L-G-Y 243 0.03217 Yes No [Parametric][General.network]Radiality 582 0.03208 No No [Nonparametric][Direction.MTF]AL-E-D 241 0.03207 Yes No [Nonparametric][Direction.MTF]AG-PG 265 0.03195 Yes No [Nonparametric][Direction.MTF]AG-SS 202 0.03195 Yes No [Nonparametric][Direction.MTF]A-G-TA 260 0.03182 Yes No [Nonparametric][Direction.MTF]AEL-E 259 0.03163 Yes No [Nonparametric][Direction.MTF]A-K-V-R 246 0.03144 Yes No [Nonparametric][Direction.MTF]A-K-L-F 215 0.03138 Yes No [Nonparametric][General.tissue]BTO:0000020 516 0.03134 No No [Nonparametric][General.tissue]BTO:0000091 517 0.03134 No No [Parametric][General.evolution]Average_dN_with_Chimpanzee 96 0.03132 No No [Parametric][General.evolution]Average_dS_with_Chimpanzee 97 0.03131 No No [Nonparametric][Direction.MTF]AG-T-A 188 0.03128 Yes No [Nonparametric][Direction.MTF]A-KV-S 181 0.03126 Yes No [Parametric][General.AAC]Acidic/Negative_charged 132 0.03119 Yes No [Nonparametric][Direction.MTF]A-A-SE 263 0.03117 Yes No [Nonparametric][Direction.MTF]A-L-VP 239 0.03111 Yes No [Nonparametric][Direction.MTF]A-S-DS 201 0.03100 Yes No [Nonparametric][Direction.MTF]A-M-A-L 191 0.03097 Yes No [Nonparametric][General.tissue]BTO:0000534 383 0.03087 No No [Nonparametric][General.tissue]BTO:0001363 437 0.03087 No No [Nonparametric][Direction.MTF]AGL-L 256 0.03085 Yes No [Parametric][General.network]ClosenessCentrality 577 0.03071 No No [Nonparametric][Direction.MTF]AK-V-S 225 0.03054 Yes No [Nonparametric][General.tissue]BTO:0000123 348 0.03051 No No [Nonparametric][Direction.MTF]A-D-P-L 264 0.03033 Yes No [Nonparametric][General.codon]TGG_(W) 78 0.03022 No No [Nonparametric][Direction.MTF]AL-K-R 223 0.03019 Yes No [Nonparametric][Direction.MTF]AGS-S 205 0.03017 Yes No [Nonparametric][Direction.MTF]A-P-G-P-A 224 0.02994 Yes No [Nonparametric][Direction.MTF]AS-AL 240 0.02993 Yes No [Nonparametric][Direction.MTF]AA-I-L 248 0.02985 Yes No [Nonparametric][General.tissue]BTO:0000269 365 0.02984 No No [Nonparametric][Direction.MTF]A-FS-L 255 0.02980 Yes No [Nonparametric][Direction.HIV-1]vif 571 0.02966 No No [Nonparametric][Direction.MTF]A-KL-G 230 0.02965 Yes No [Parametric][General.evolution]dN/dS 95 0.02956 No No [Nonparametric][Direction.MTF]AE-R-K 193 0.02953 Yes No [Nonparametric][General.tissue]BTO:0000855 552 0.02940 No No [Nonparametric][General.tissue]BTO:0000088 346 0.02932 No No [Nonparametric][General.tissue]BTO:0000562 385 0.02932 No No [Nonparametric][General.tissue]BTO:0001085 553 0.02904 No No [Nonparametric][Direction.MTF]A-A-N-V 252 0.02891 Yes No [Nonparametric][Direction.MTF]A-E-Y-L 249 0.02888 Yes No [Nonparametric][General.tissue]BTO:0000345 370 0.02856 No No [Nonparametric][Direction.MTF]A-E-P-Q 254 0.02849 Yes No [Nonparametric][Direction.MTF]A-D-A-Q 258 0.02847 Yes No [Nonparametric][Direction.HIV-1]gag-pol 566 0.02838 No No [Nonparametric][Direction.MTF]A-FS-S 184 0.02776 Yes No [Nonparametric][Direction.MTF]A-A-I-Q 212 0.02762 Yes No [Nonparametric][General.GOBProot]GO:0022414 284 0.02758 No No [Nonparametric][General.GOCCroot]GO:0044464 333 0.02741 No No [Nonparametric][Direction.MTF]AC-F 262 0.02693 Yes No [Nonparametric][General.tissue]BTO:0001613 459 0.02688 No No [Nonparametric][General.tissue]BTO:0000142 351 0.02651 No No [Nonparametric][General.tissue]BTO:0000227 359 0.02651 No No [Nonparametric][Direction.MTF]MTF_occurrence 267 0.02641 Yes No [Nonparametric][Direction.MTF]A-D-P-Q 166 0.02612 Yes No [Nonparametric][General.tissue]BTO:0001484 450 0.02602 No No [Nonparametric][Direction.MTF]A-C-S-S 245 0.02581 Yes No [Nonparametric][Direction.MTF]AD-L-G 236 0.02578 Yes No [Nonparametric][General.GOCCroot]GO:0045202 334 0.02542 No No [Nonparametric][General.tissue]BTO:0000254 364 0.02522 No No [Nonparametric][General.tissue]BTO:0003099 468 0.02512 No No [Nonparametric][General.tissue]BTO:0001244 430 0.02492 No No [Nonparametric][General.tissue]BTO:0003092 466 0.02492 No No [Nonparametric][General.tissue]BTO:0000203 356 0.02429 No No [Nonparametric][General.tissue]BTO:0000763 402 0.02429 No No [Nonparametric][General.tissue]BTO:0000753 400 0.02399 No No [Nonparametric][General.tissue]BTO:0005810 471 0.02399 No No [Nonparametric][General.tissue]BTO:0000706 398 0.02391 No No [Nonparametric][General.GOBProot]GO:0007610 277 0.02306 No No [Nonparametric][General.tissue]BTO:0000080 341 0.02301 No No [Nonparametric][General.GOBProot]GO:0022610 285 0.02287 No No [Nonparametric][Direction.MTF]AA-LK 253 0.02283 Yes No [Nonparametric][General.tissue]BTO:0000570 386 0.02255 No No [Nonparametric][General.GOMFroot]GO:0005215 303 0.02215 No No [Nonparametric][General.tissue]BTO:0000282 366 0.02182 No No [Nonparametric][General.tissue]BTO:0000082 343 0.02171 No No [Nonparametric][General.tissue]BTO:0003096 467 0.02171 No No [Parametric][General.network]Degree 579 0.02124 No No [Nonparametric][General.tissue]BTO:0000648 392 0.02079 No No [Nonparametric][General.tissue]BTO:0000511 381 0.02030 No No [Nonparametric][General.tissue]BTO:0000083 344 0.02027 No No [Nonparametric][General.GOBProot]GO:0023052 286 0.01966 No No [Nonparametric][Direction.MTF]AA-AF 261 0.01964 Yes No [Nonparametric][General.tissue]BTO:0000081 342 0.01897 No No [Nonparametric][General.GOCCroot]GO:0099080 337 0.01820 No No [Parametric][General.network]BetweennessCentrality 576 0.01816 No No [Nonparametric][General.tissue]BTO:0000058 340 0.01800 No No [Nonparametric][General.GOBProot]GO:0008283 279 0.01673 No No [Nonparametric][General.tissue]BTO:0001488 454 0.01596 No No [Nonparametric][General.tissue]BTO:0003091 465 0.01586 No No [Parametric][General.network]Stress 583 0.01581 No No [Nonparametric][General.tissue]BTO:0000522 382 0.01458 No No [Nonparametric][General.tissue]BTO:0001491 457 0.01443 No No [Nonparametric][General.GOMFroot]GO:0005198 302 0.01367 No No [Nonparametric][Direction.HIV-1]vpu 573 0.01223 No No [Nonparametric][General.tissue]BTO:0001208 554 0.01073 No No [Nonparametric][General.tissue]BTO:0000042 338 0.00996 No No [Nonparametric][General.tissue]BTO:0001489 455 0.00996 No No [Nonparametric][General.GOBProot]GO:0048511 293 0.00950 No No [Nonparametric][General.GOBProot]GO:0001906 273 0.00942 No No [Parametric][Direction.HIV-1]HIV-1_No. 574 0.00748 No No [Nonparametric][General.GOBProot]GO:0098754 300 0.00596 No No [Nonparametric][General.GOMFroot]GO:0038024 307 0.00578 No No [Nonparametric][General.GOMFroot]GO:0016209 305 0.00513 No No [Nonparametric][General.tissue]BTO:0000368 562 0.00499 No No [Nonparametric][General.GOBProot]GO:0043473 291 0.00464 No No [Nonparametric][General.GOCCroot]GO:0044217 327 0.00434 No No [Nonparametric][General.GOBProot]GO:0040007 289 0.00421 No No [Nonparametric][General.GOCCroot]GO:0005623 318 0.00252 No No [Nonparametric][Direction.HIV-1]rev 569 0.00167 No No [Nonparametric][General.GOCCroot]GO:0009295 319 0.00150 No No [Nonparametric][General.GOMFroot]GO:0140104 314 0.00100 No No [Nonparametric][General.GOBProot]GO:0019740 283 0.00033 No No [Nonparametric][General.codon]ATG_(M) 39 0.00000 No No [Nonparametric][General.GOBProot]GO:0000003 272 0.00000 No No [Nonparametric][General.GOBProot]GO:0006791 275 0.00000 No No [Nonparametric][General.GOBProot]GO:0006794 276 0.00000 No No [Nonparametric][General.GOBProot]GO:0009758 280 0.00000 No No [Nonparametric][General.GOBProot]GO:0015976 282 0.00000 No No [Nonparametric][General.GOBProot]GO:0044848 292 0.00000 No No [Nonparametric][General.GOBProot]GO:0098743 299 0.00000 No No [Nonparametric][General.GOMFroot]GO:0031386 306 0.00000 No No [Nonparametric][General.GOMFroot]GO:0044183 308 0.00000 No No [Nonparametric][General.GOMFroot]GO:0045182 309 0.00000 No No [Nonparametric][General.GOMFroot]GO:0045735 310 0.00000 No No [Nonparametric][General.GOMFroot]GO:0090729 312 0.00000 No No [Nonparametric][General.GOMFroot]GO:0140299 316 0.00000 No No [Nonparametric][General.GOCCroot]GO:0019012 321 0.00000 No No [Nonparametric][General.GOCCroot]GO:0044215 326 0.00000 No No [Nonparametric][General.GOCCroot]GO:0044423 330 0.00000 No No [Nonparametric][General.GOCCroot]GO:0055044 335 0.00000 No No [Nonparametric][General.GOCCroot]GO:0097423 336 0.00000 No No [Nonparametric][Direction.HIV-1]asp 563 0.00000 No No